gridgene

• gridgene.contours module
• gridgene.get_masks module
  • timeit()
  • GetMasks
    • GetMasks.filter_binary_mask_by_area()
    • GetMasks.filter_labeled_mask_by_area()
    • GetMasks.create_mask()
    • GetMasks.fill_holes()
    • GetMasks.apply_morphology()
    • GetMasks.subtract_masks()
    • GetMasks.save_masks_npy()
    • GetMasks.save_masks()
    • GetMasks.plot_masks()
    • GetMasks.plot_labeled_masks()
  • ConstrainedMaskExpansion
    • ConstrainedMaskExpansion.expand_mask()
    • ConstrainedMaskExpansion.propagate_labels()
  • SingleClassObjectAnalysis
    • SingleClassObjectAnalysis.mask
    • SingleClassObjectAnalysis.expansion_distances
    • SingleClassObjectAnalysis.labelled_mask
    • SingleClassObjectAnalysis.binary_masks
    • SingleClassObjectAnalysis.labelled_masks
    • SingleClassObjectAnalysis.reference_masks
    • SingleClassObjectAnalysis.get_mask_objects()
    • SingleClassObjectAnalysis.get_objects_expansion()
    • SingleClassObjectAnalysis.propagate_labels()
  • MultiClassObjectAnalysis
    • MultiClassObjectAnalysis.multiple_contours
    • MultiClassObjectAnalysis.height
    • MultiClassObjectAnalysis.width
    • MultiClassObjectAnalysis.save_path
    • MultiClassObjectAnalysis.vor
    • MultiClassObjectAnalysis.all_centroids
    • MultiClassObjectAnalysis.class_labels
    • MultiClassObjectAnalysis.binary_masks
    • MultiClassObjectAnalysis.labeled_masks
    • MultiClassObjectAnalysis.referenced_masks
    • MultiClassObjectAnalysis.voronoi_finite_polygons_2d()
    • MultiClassObjectAnalysis.get_polygons_from_contours()
    • MultiClassObjectAnalysis.derive_voronoi_from_contours()
    • MultiClassObjectAnalysis.get_voronoi_mask()
    • MultiClassObjectAnalysis.expand_mask()
    • MultiClassObjectAnalysis.generate_expanded_masks_limited_by_voronoi()
    • MultiClassObjectAnalysis.plot_masks_with_voronoi()
• gridgene.mask_properties module
• gridgene.overlay module
• gridgene.binsom module
• gridgene.logger module
  • get_logger()
• gridgene.get_arrays module
  • transform_df_to_array()
  • get_subset_arrays_V1()
  • get_subset_arrays()