Examples and Tutorials
======================

Welcome to the tutorials and getting started guide for GRIDGENE!

.. toctree::
   :maxdepth: 2
   :caption: Case Studies:

   ../case_studies/1_derive_cancer_stroma_CosMx.ipynb
   ../case_studies/2_derive_cancer_stroma_Xenium.ipynb
   ../case_studies/3_kernel_size_influence.ipynb
   ../case_studies/4_cancer_stroma_interface_xenium.ipynb
   ../case_studies/5_population_specific_objects_single.ipynb
   ../case_studies/6_population_specific_objects_multi.ipynb
   ../case_studies/7_overlay_cell_segmentation.ipynb
   ../case_studies/8_alternative_ways_masking_som.ipynb
   ../case_studies/9_alternative_ways_masking_KDTree.ipynb


   ../case_studies/T_tutorial_general.ipynb
   ../case_studies/T_tutorial_hierarchy_analysis.ipynb