Welcome to GRIDGENE’s documentation!#
GRIDGENE is a tool for extracting, organizing, and visualizing transcriptomic spatial data.
It is designed to help researchers and data scientists work with spatial transcriptomics data efficiently.
Contents:
- Tutorials
- Derive cancer and stroma masks in CosMx data
- Derive cancer and stroma masks in Xenium data
- Influence of Kernel size parameter
- Analysis of Cancer Stroma Interface in Xenium
- Identify specific populations and expand these masks - Single object
- Identify specific populations and expand these masks - multiobject
- Integration of GRIDGEN with cell segmentation
- Alternative ways of masking - SOM
- Alternative ways of masking - KDTree
- General aspects of the pipeline
- Tutorial Hierarchy analysis
- API Reference